PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0011s0166.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 348aa    MW: 38052.5 Da    PI: 6.792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0011s0166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-193080256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         +y GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  Kalax.0011s0166.1.p 30 KYVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDEAARSLRGA 80
                         8********.7*********....4456*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-203087IPR016177DNA-binding domain
SMARTSM003804.3E-363093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-293087IPR001471AP2/ERF domain
CDDcd000189.05E-313087No hitNo description
PROSITE profilePS5103220.9163087IPR001471AP2/ERF domain
PfamPF008471.3E-133079IPR001471AP2/ERF domain
PRINTSPR003673.4E-83142IPR001471AP2/ERF domain
PRINTSPR003673.4E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNRQRNMGVP SQPTIIKSAK KKASSRGHHK YVGVRQRPSG RWVAEIKDSL QKVRLWLGTF  60
DTAEDAARAY DEAARSLRGA NARTNFELPP QMKNGRGGFL RPLTEWAEPF SFELECGTSD  120
DARGGLIAAL KAKLLDGKGA DGAVSLPHMS GSSRIKANHD TGLLRKHVDG PKMRQQTTDR  180
IAQSIIINPN PPTLVQDSCL LKFSKSDMPI DHDDHDDLIA SAAAQWADQA NHTAQLENVV  240
WPLADPWNNT QMTMSHFHQE ESLFLSHSNG NSSGSSAGWP LAVTTDTSAQ FSYHNQCDPM  300
ELAPSVIDAA CIWPEQQFAQ SENNNAWGCS ASGSFDQLLY LSSMLLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142588164ATERF1
3gcc_A2e-142588164ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-18related to AP2 11